Genomics 2 Notebook (g2nb) combines the accessibility and research narrative capabilities of Jupyter Notebook with the genomics tools available in Galaxy, GenePattern, and other popular bioinformatics platforms, adding many features for ease of use by non-programming scientists. This is a free, public, internet accessible resource.
Getting Started
g2nb seamlessly incorporates analyses available in Galaxy, GenePattern, Cytoscape, IGV, and other tools directly into a notebook, allowing a single document to contain a workflow with analyses hosted on many servers.
Hundreds of genomic analysis tools available from within a notebook, no programming required
Executable notebooks based on and compatible with Jupyter Notebooks, accessible through a browser, no installation required
Browse a collection of genomic and machine learning notebooks and adapt them for your own use
Notebooks are contained in projects that can have their own packages and libraries, allowing all dependencies to be encapsulated in a single environment, providing reproducibility.
Publish a notebook in our library or share it with a collaborator
Develop notebooks within separate customizable environments
Ensure reproducibility of your methods by adding a link to your notebook in a publication
A single notebook can run analyses hosted on a variety of cloud and high performance compute resources, allowing tools within a notebook to be run on the resources best suited to their requirements.
g2nb is built for scientists and programmers alike
pip install g2nbconda install -c g2nb g2nb
